Package: ProbMetab
Type: Package
Title: Probabilistic annotation of LC-MS based metabolomics
Version: 1.0
Date: 2013-05-23
Author: Ricardo R. Silva, Diego Martinez Salvanha, Ricardo Vencio
Maintainer: Ricardo Silva <rsilvabioinfo@usp.br>
Description: Provides probability ranking to candidate compounds assigned
    to masses, with the prior assumption of connected sample and
    additional previous and spectral information modeled by the user.
License: GPL (>= 2)
URL: http://labpib.fmrp.usp.br/methods/probmetab/
LazyData: true
ByteCompile: true
Depends:
    R (>= 2.10),
    RcppArmadillo,
    Rcpp,
    CAMERA,
    GeneNet,
    graph,
    RCytoscape,
    hwriter,
    RCurl,
    XML,
    multtest,
    rjson
Suggests:
    mzmatch.R,
    bootstrap,
    leaps,
    mgcv
LinkingTo: RcppArmadillo, Rcpp
Collate:
    'RCreateDataFrame.R'
    'combineMolIon.R'
    'comp.results.R'
    'create.reactionM.R'
    'createXGMML.R'
    'design.connection.R'
    'export.class.table.R'
    'export2cytoscape.R'
    'formula2mass.R'
    'get.Mzmatch.annot.R'
    'get.annot.R'
    'get.compounds.by.pathway.biocyc.R'
    'get.kegg.pathways.R'
    'get.name.R'
    'get.ncbi.id.R'
    'get.pathway.by.organism.biocyc.R'
    'get.reactions.by.compound.biocyc.R'
    'gibbs.samp.R'
    'incorporate.isotopes.R'
    'reac2cor.R'
    'rt.predict.R'
    'sbml2table.R'
    'weightM.R'
    'weightRT.R'
    'get.pathway.by.compound.kegg.R'
    'create.pathway.node.attributes.R'
    'create.reaction.edge.attributes.R'
    'createJSONToCytoscape.R'
    'get.pathway.by.organism.kegg.R'
    'openGraph.R'
    'get.kgml.positions.kegg.R'
    'get.formula.kegg.R'
    'build.database.kegg.R'