createXGMML | R Documentation |
Creates a Cytoscape xgmml readable file.
createXGMML(gr, node.label, cwName = "test", node.form = NULL, edge.form = NULL, attributes = NULL, path)
gr |
a graphNEL object generated by edge matrices provided by reac2cor. |
node.label |
a character vector containing the name of each node. |
cwName |
Cytoscape window name. |
node.form |
data.frame containing the names of the nodes in the first column, and TRUE/FALSE vectors for graph parameters in the additional columns. The column name should have the parameter type, color and shape and the value in the format "color.#FF0000". |
edge.form |
data.frame containing the names of the nodes in the first column, and TRUE/FALSE vectors for graph parameters in the additional columns. The column name should have the parameter type, color, width and style, and the value in the format "color.#FF0000". |
attributes |
classification table created by export.class.table function. |
path |
system path to save the file. |
Cytoscape xgmml readable file.