ChIP-seq.ggb red triangles ChIP-seq data from Wilbanks et al Nucleic Acids Res. 2012 May; 40(10): e74. MFE_RNAfold_fwd MFE_RNAfold_rev horizontal light blue segments minimum free energy calculated by ten-Caten et al RNA Biol. 2018;15(8):1119-1132. TEX+_log2_5p_fwd TEX+_log2_5p_rev (track not visible by default, needs to be activated) blue vertical "histogram" bars at single base resolution 5' profile of TEX treated samples log2 scale log counts of how many reads start at a given position fwd is forward strand and rev is reverse strand TEX-_log2_5p_fwd TEX-_log2_5p_rev (track not visible by default, needs to be activated) yellow vertical "histogram" bars at single base resolution 5' profile of TEX free samples (thus normal size truncated 600 nt transcriptome) log2 scale log counts of how many reads start at a given position fwd is forward strand and rev is reverse strand TEX-_log2_3p_fwd TEX-_log2_3p_rev (track not visible by default, needs to be activated) red vertical "histogram" bars at single base resolution 3' profile of TEX free samples shows where reads stop. shows the end of sequenced fragments log2 scale log counts of how many reads start at a given position fwd is forward strand and rev is reverse strand TEX_minus_fwd TEX_minus_rev light green coverage profile of TEX free samples (thus normal size truncated 600 nt transcriptome) counts of how many reads crossed a specific genomic position (coverage) fwd is forward strand and rev is reverse strand TEX_plus_fwd TEX_plus_rev dark green coverage profile of TEX treate samples (enzyme digests non-primary fragments monophosphate ends) counts of how many reads crossed a specific genomic position (coverage) fwd is forward strand and rev is reverse strand annotation-NCBI-Halolex-2018_v02.txt.xls orange (reverse strand) and yellow (forward) boxes H. salinarum NRC-1 gene annotations aTSS_fwd.xls aTSS_rev.xls magenta triangles positions of detected antisese primary transcript start sites (aTSS) If cognate gene is in fwd strand, antisense (which is in rev strand) is shown in fwd strand too inside the cognate gene to facilitate understanding. Conversely, if gene is in reverse strand, an aTSS associated to it is shown along in rev strand too inspite of being detected at fwd strand. asRNA_loci magenta boxes Represented in the appropriate strand: if asRNA loci is in reverse strand it will be shown in rev strand and its cognate gene will be in fwd.